The latest list can be found in Google Scholar. My Erdös number is 4 (Rolf Backofen -> B.Berger -> D. J. Kleitman -> P. Erdös).

Journal publications

  1. Pyysalo S., Campos J., Cejuela J.M., Ginter F., Hakala K., Li C., Stenetorp P., Jensen L.J., Sharing annotations better: RESTful Open Annotation, in Proceedings of ACL-IJCNLP 2015 System Demonstrations, pages 91–96, Beijing, China, July 26-31, 2015
  2. Li C., Song R., Liakata M., Vlachos A., Zhang X., Using word embedding for bio-event extraction, in Proceedings of ACL BioNLP workshop (2015)
  3. Li C., Liakata M., Seneff S., Bio-event definition in text mining towards event interconnection, in Proceedings of Biomedical Linked Annotation Hackathon and Symposium (2015) [PDF]
  4. Seneff S., Swanson N., Li C., Aluminum and Glyphosate Can Synergistically Induce Pineal Gland Pathology: Connection to Gut Dysbiosis and Neurological Disease. Agricultural Sciences (2015) [DOI]
  5. Rebholz-Schuhmann D., Kafkas S., Kim J., Li C., Jimeno-Yepes A., Hoehndorf R., Backofen R., Lewin I., Evaluating gold standard corpora against gene/protein tagging solutions and lexical resources Journal of Biomedical Semantics (2013). [DOI] [PDF]
  6. Li C., Jimeno-Yepes A., Arregui M., Kirsch H., Rebholz-Schuhmann D., PCorral – interactive mining of protein interactions from MEDLINE. Database (Oxford Journals) (2013). [DOI]
  7. Li C., Liakata M., Rebholz-Schuhmann D., Biological network extraction from scientific literature: state of the art and challenges. Briefings in Bioinformatics (2013). [MEDLINE] [DOI] [PDF]
  8. Rebholz-Schuhmann D., Jimeno-Yepes A., and Li C., Assessment of NER solutions against the first and second CALBC Silver Standard Corpus, J Biomed Semantics (2011). [DOI] [PDF]
  9. Croset S, Grabmüller C, Li C., Kavaliauskas S., Rebholz-Schuhmann D., The CALBC RDF Triple store: retrieval over large literature content. Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences (2010). [PDF]
  10. Li C., Donizelli M., Rodriguez N., Dharuri H., Endler L., Chelliah V., Li L., He E., Henry A., Stefan M.I., Snoep J.L., Hucka M., Le Novère N., Laibe C., BioModels Database, enhanced curated and annotated resource of published quantitative kinetic models. BMC systems biology (2010). [MEDLINE] [DOI] [PDF]
  11. Li C., Courtot M., Le Novère N., Laibe C., BioModels.net Web Services, a free and integrated toolkit for computational modelling software. Briefings in Bioinformatics (2009). [MEDLINE] [DOI] [PDF]
  12. Endler L., Rodriguez N., Juty N., Chelliah V., Laibe C., Li C., Le Novère N. Designing and encoding models for Synthetic Biology. Journal of the Royal Society Interface (2009), 6: S405-S417. [MEDLINE] [DOI] [PDF]

Book chapter

  1. Chelliah V., Endler L., Juty N., Laibe C., Li C., Rodriguez N., Le Novère N. Data Integration and Semantic Enrichment of Systems Biology Models and Simulations. 6th International workshop Data Integration in the Life Sciences, Lecture Notes in Bioinformatics (2009), 5647: 5-15. [DOI] [PDF]

Thesis

  1. Li C., Biological network evaluation and relation discovery from scientific literature, University of Cambridge [PDF]

Presentations

  1. BioModels Database, a database of curated and annotated quantitative models with Web Services and analysis tools, 17th International Conference On Intelligent Systems For Molecular Biology, July, 2009
  2. Model Simulation in BioModels Database, 4th BioModels.net meeting, March, 2009, Cambridge, UK
  3. BioModels Database version 3, Systems Biology Markup Language Forum, October, 2008, Gothenburg, Sweden
  4. Insights in BioModels DB Version3, 2nd BioModels.net meeting, January, 2007, Manchester, UK
  5. BioModels Database, Systems Biology Markup Language Forum, October, 2006, Yokohama, Japan
  6. BioModels Database, 14th International Conference On Intelligent Systems For Molecular Biology, July, 2006.
  7. MIRIAM Web Services, BioModels Database infrastructure, search and annotation, 1st BioModels.net meeting, April, 2006, Cambridge, UK

Posters

  1. BioModels Database, enhanced curated and annotated resource of published quantitative kinetic models, 9th International Conference On Systems Biology, Gothenburg, Sweden, October, 2008.
  2. BioModels Database, a curated and annotated resource of published quantitative kinetic models, 8th International Conference On Systems Biology, Long Beach, California, October, 2007.
  3. BioModels Database, a curated and annotated resource of published quantitative kinetic models, 7th International Conference On Systems Biology, Yokohama, Japan, October, 2006.
  4. Curation and annotation for BioModels Database, a resource of published quantitative kinetic models. C. Vijayalakshmi, L. Endler, C. Laibe, C. Li, and N. Le Novère, Nature Precedings (2009)