Journal publications

1. Jimeno-Yepes A., Li C., Narayanasamy M, Kim J., Baillif A., Rebholz-Schuhmann D., IeXMLAlignment: processing of large sets of annotated documents. writing. (2011)
2. Croset S, Grabmüller C, Li C., Kavaliauskas S., Rebholz-Schuhmann D., The CALBC RDF Triple store: retrieval over large literature content. Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences (2010) [PDF]
3. Li C., Donizelli M., Rodriguez N., Dharuri H., Endler L., Chelliah V., Li L., He E., Henry A., Stefan M.I., Snoep J.L., Hucka M., Le Novère N., Laibe C., BioModels Database, enhanced curated and annotated resource of published quantitative kinetic models. BMC systems biology (2010). [MEDLINE] [DOI] [PDF]
4. Li C., Courtot M., Le Novère N., Laibe C., BioModels.net Web Services, a free and integrated toolkit for computational modelling software. Briefings in Bioinformatics (2009). [MEDLINE] [DOI] [PDF]
5. Chelliah V., Endler L., Juty N., Laibe C., Li C., Rodriguez N., Le Novère N. Data Integration and Semantic Enrichment of Systems Biology Models and Simulations. 6th International workshop Data Integration in the Life Sciences, Lecture Notes in Bioinformatics (2009), 5647: 5-15. [PDF]
6. Endler L., Rodriguez N., Juty N., Chelliah V., Laibe C., Li C., Le Novère N. Designing and encoding models for Synthetic Biology. Journal of the Royal Society Interface (2009), 6: S405-S417. [MEDLINE] [DOI] [PDF]

Conference proceedings

1. Rebholz-Schuhmann D., Jimeno-Yepes A., Li C., Kafkas S., Lewin I., Kang N., Corbett P., Milward D., Buyko E., Beisswanger E., Hornbostel K., Kouznetsov A., Witte R., Laurila J. B., Baker C. J., Kuo C. J., Clematide S., Rinaldi F., Farkas R., Mora G., Hara K., Furlong L., Rautschka M., Neves M. L., Pascual-Montano A., Wei Q., Collier N., Chowdhury F. M., Lavelli A., Berlanga R., Morante R., van Asch V., Daelemans W., Marina J. L., van Mulligen E., Kors J., and Hahn U., Assessment of NER solutions against the first and second CALBC Silver Standard Corpus, Proc. of SMBM 2010, Cambridge, UK. [DOI] [PDF]

Presentations

1. BioModels Database, a database of curated and annotated quantitative models with Web Services and analysis tools, 17th International Conference On Intelligent Systems For Molecular Biology, July, 2009
2. Model Simulation in BioModels Database, 4th BioModels.net meeting, March, 2009, Cambridge, UK
3. BioModels Database version 3, Systems Biology Markup Language Forum, October, 2008, Gothenburg, Sweden
4. Insights in BioModels DB Version3, 2nd BioModels.net meeting, January, 2007, Manchester, UK
5. BioModels Database, Systems Biology Markup Language Forum, October, 2006, Yokohama, Japan
6. BioModels Database, 14th International Conference On Intelligent Systems For Molecular Biology, July, 2006.
7. MIRIAM Web Services, BioModels Database infrastructure, search and annotation, 1st BioModels.net meeting, April, 2006, Cambridge, UK

Posters

1. BioModels Database, enhanced curated and annotated resource of published quantitative kinetic models, 9th International Conference On Systems Biology, Gothenburg, Sweden, October, 2008.
2. BioModels Database, a curated and annotated resource of published quantitative kinetic models, 8th International Conference On Systems Biology, Long Beach, California, October, 2007.
3. BioModels Database, a curated and annotated resource of published quantitative kinetic models, 7th International Conference On Systems Biology, Yokohama, Japan, October, 2006.
4. Curation and annotation for BioModels Database, a resource of published quantitative kinetic models. C. Vijayalakshmi, L. Endler, C. Laibe, C. Li, and N. Le Novère, Nature Precedings (2009)